PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1360_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 188aa    MW: 21396.2 Da    PI: 5.5842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1360_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09105145954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L+ l+P       +K++ a++L +A++YIk L
  RrC1360_p3 105 ARHRRERISERIRILQILVPGG-----TKMDTASMLDEAIRYIKFL 145
                 599*****************87.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.79996145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-13102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11104152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6106145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-6119150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNNKSDHHHH NDPIGMAAMD QHPQLRIFNP FTSSHLPPLS SSLSATTFFS EDQEEEEEPV  60
EELSAMKEMM YKVAAMQPVD IDPETVKIPK RRNVRISDDP QTVAARHRRE RISERIRILQ  120
ILVPGGTKMD TASMLDEAIR YIKFLKRQIR LLDNPPPPQD QDSQAMTTSW VSELPPPDFG  180
SGAGGRDW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125350.13e-83PREDICTED: transcription factor HEC3
RefseqXP_013712271.13e-83PREDICTED: transcription factor HEC3
SwissprotQ9LXD82e-70HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A078G9C45e-89A0A078G9C4_BRANA; BnaC09g46950D protein
STRINGBra028620.1-P9e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-52bHLH family protein